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The Ohio State University/Indiana University Center for Cancer Systems Biology Annual Workshop
| What | Meeting |
|---|---|
| When |
2010-06-07 from 08:30 to 18:00 |
| Where | Columbus, Ohio |
| Contact Name | Pearlly Yan |
| Contact Email | Pearlly.Yan@osumc.edu |
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The OSU-IU Center for Cancer Systems Biology (CCSB, formerly designated as OSU-IU ICBP) has assembled a team of 25 computational and bench scientists to study epigenetic control of critical signaling networks in prostate, breast, and ovarian cancers. Based on our recent progress and preliminary findings, we will test the hypothesis that epigenetic deregulation of androgen receptor (AR), estrogen receptor a (ERa), or TGF-ß/SMAD4 signaling-mediated transcriptional networks underlies the transition of a hormone-/chemo-sensitive phenotype to a hormone-/chemo-insensitive phenotype in cancer. We anticipate that the study will yield significant insight into the role of permissive and non-permissive chromatin in cancer and drug-resistant disease. ___________________________________________________________________________________________________________
OSU/IU Center for Cancer Systems Biology Annual Workshop
Room 115 Biomedical Research Tower
Columbus Ohio, 43210
Monday, June 7, 2010: 9:00 AM to 6:00 PM
8:30 – 9:00 Registration, Coffee and Continental Breakfast
9:00 – 9:30 Dr. Ken Nephew, Professor, Department of Medical Sciences, Indiana University at Bloomington http://www.bloomington.medicine.iu.edu/body.cfm?id=193
Title: Welcome, Introduction and Overview
9:30 – 10:15 Dr. Wei Li, Assistant Professor, Department of Molecular and Cellular Biology, Baylor College of Medicine, (http://www.bcm.edu/mcb/?PMID=7802)
Title: A Genomic View of Epigenetic Regulation in Cancer
10:15 – 11:00 Dr. Shili Lin, Professor, Department of Statistics, OSU (http://www.stat.osu.edu/~shili)
Title: Predicting Promoters and Enhancers in Prostate Cancer
11:00 – 11:45 Dr. Victor Jin, Assistant Professor, Department of Biomedical Informatics, (http://biomed.osu.edu/bmi/directory/faculty/jin/jincv/)
Title: A survey of computational algorithms to identify binding motifs for ChP-seq data
11:45 – 12:00 Dr. Ken Nephew, Discussions for Morning Session
12:00 – 1:00 Lunch Break
1:00 – 1:45 Dr. Justin (Jeong-Hyeon) Choi, Assistant Scientist and BioComputing Unit Leader, Indiana University at Bloomington (https://wiki.cgb.indiana.edu/display/grp/Jeong-Hyeon+Justin+Choi)
Title: DNA methylation study using next generation sequencing technologies with bisulfite treatment
1:45 – 2:30 Dr. Yunlong Liu, Assistant Professor, Department of Medicine, Division of Biostatistics, Indiana University-Purdue University Indianapolis (http://compbio.iupui.edu/group/6/pages/about_us)
Title: RNA-seq data analysis – gene expression, alternative splicing, and noncoding RNA
2:30 – 3:15 Dr. Ralf Bundschuh, Associate Professor, Co-Director of the Interdisciplinary Biophysics Program, Department of Physics and Biochemistry, OSU (http://cannoli.mps.ohio-state.edu/~rbund/)
Title: Complete characterization of insertional editing sites in Physarum polycephalum mitochondria using deep sequencing of RNA
3:15 – 3:30 Coffee Break
3:30 – 4:15 Dr. Kun Huang, Assistant Professor, Department of Biomedical Informatics, OSU (http://bmi.osu.edu/~khuang/)
Title: To be announced
4:15 – 5:00 Dr. H. Gulcin Ozer, Post-doctoral Researcher, Department of Biomedical Informatics, OSU (http://www.biosci.ohio-state.edu/~ozer/)
Title: Part I: Utilizing and Automating Illumina GA Pipeline; Part II: Comparing multiple sequencing experiments
5:00 – 5:45 Dr. Samuel Handelman, Post-doctoral Researcher, Mathematical Biosciences Institute, OSU
Title: Simple fun with sequence data
5:45 – 6:00 Dr. Ken Nephew, Discussions for Afternoon Session
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